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RNA Sequences 5S Ribosomal RNA Database http://biobases.ibch.poznan.pl/5SData/ 5S rRNA sequences ACTIVITY http://wwwmgs.bionet.nsc.ru/mgs/systems/activity/ Functional DNA/RNA site activity ARED http://rc.kfshrc.edu.sa AU-rich element-containing mRNAs Collectionof mRNA-like Noncoding RNAs http://biobases.ibch.poznan.pl/ncRNA/ Non-protein-coding RNA transcripts European Large Subunit Ribosomal RNA Databasehttp://rrna.uia.ac.be/lsu/index.html Alignment of large subunit ribosomal RNA sequences with secondary structure information European Small SubunitRibosomal RNA Database http://rrna.uia.ac.be/ssu/index.html Alignment of small subunit ribosomal RNA sequences with secondary structure information Guide RNA Database http://www.biochem.mpg.de/~goeringe/ Guide RNA sequences HyPaLib http://bibiserv.techfak.uni-bielefeld.de/HyPa/ Structural elements characteristic for classes of RNA Intronerator http://www.cse.ucsc.edu/~kent/intronerator/ RNA splicing andgene structure in C.elegans; alignmentsof Caernorhabditis briggsae and C.elegans genomic sequences Non-CanonicalInteractions in RNA http://prion.bchs.uh.edu/bp_type/ Non-standard base-base interactions in known RNA structures PLMItRNA http://bigarea.area.ba.cnr.it:8000/PLMItRNA/ Mitochondrial tRNA genes and molecules in photosynthetic eukaryotes Pseudobase http://wwwbio.leidenuniv.nl/~Batenburg/PKB.html Information on RNA pseudoknots RISCC http://ulises.umh.es/RISSC Ribosomal 16S-23S RNA gene spacerregions RNA Modification Database http://medlib.med.utah.edu/RNAmods/ Naturally modified nucleosides in RNA Ribosomal Database Project (RDP) http://rdp.cme.msu.edu/ rRNA sequences, alignments and phylogenies SELEXdb http://wwwmgs.bionet.nsc.ru/mgs/systems/selex/ Selected DNA/RNA functional site sequences SRPDB http://psyche.uthct.edu/dbs/SRPDB/SRPDB.html Signal recognition particle RNA, proteinand receptor sequences SmallRNA Database http://mbcr.bcm.tmc.edu/smallRNA Direct sequencing of small RNA sequences from prokaryotes and eukaryotes ThetmRNA Websitehttp://www.indiana.edu/~tmrna tmRNA sequences, foldings andalignments UTRdb/UTRsite http://bigarea.area.ba.cnr.it:8000/EmbIT/UTRHome/ 5'¡¯ and 3'¡¯ UTRs of eukaryotic mRNAs and relevant functional patterns Viroids and viroid-like RNAs http://nt.ars-grin.gov/subviral/ Viroids and viroid-like RNAs Yeast snoRNA Database http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html Yeast small nucleolar RNA tRNASequences http://www.uni-bayreuth.de/departments/biochemie/trna/ TRNA and tRNA gene sequences tmRDB http://psyche.uthct.edu/dbs/tmRDB/tmRDB.html TmRNA (10Sa RNA) sequences
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