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Protein Sequence Motifs

BLOCKS http://blocks.fhcrc.org/ Conserved sequence regions of protein families
CluSTr http://www.ebi.ac.uk/clustr/ Automatic classification of SWISS-PROT+TrEMBL proteins into related groups
InterPro http://www.ebi.ac.uk/interpro/ Integrated documentation resource for protein families, domains and sites
O-GLYCBASE http://www.cbs.dtu.dk/databases/OGLYCBASE/ Glycoproteins and O-linked glycosylation sites
PIR-ALN http://www-nbrf.georgetown.edu/pirwww/dbinfo/piraln.html Protein sequence alignments
PRINTS http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/ Hierarchical gene family finger prints
PROSITE http://www.expasy.ch/prosite/ Biologically-significant protein patterns and profiles
Pfam http://www.sanger.ac.uk/Software/Pfam/ Multiple sequence alignments and hidden Markov models of common protein domains
ProClass http://pir.georgeown.edu/gfserver/proclass.html Protein families defined by PIR superfamilies and PROSITE patterns
ProDom http://www.toulouse.inra.fr/prodom.html Protein domain families
ProtoMap http://www.protomap.cs.huji.ac.il/ Automated hierarchical classification of SWISS- PROT proteins
SBASE http://www3.icgeb.trieste.it/~sbasesrv/ Annotated protein domain sequences
SMARThttp://smart.embl-heidelberg.de/ Signaling domain sequences
SYSTERS http://www.dkfz-heidelberg.de/tbi/services/cluster/systersform Classification of protein sequences into disjoint clusters with annotations from various other resources
eMOTIFhttp://motif.stanford.edu/emotif Protein sequence motif determination and searches
iPROCLASS http://pir.georgetown.edu/iproclass/ Annotated protein classification database