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Protein Databases

AARSDB http://rose.man.poznan.pl/aars/index.html Aminoacyl-tRNA synthetase sequences
ABCdbhttp://ir2lcb.cnrs-mrs.fr/ABCdb/ ABC transporters
DAtA http://luggagefast.Stanford.EDU/group/arabprotein/ Annotated coding sequences from Arabidopsis
DExH/DFamily Database http://www.columbia.edu/~ej67/dbhome.htm DEAD-box, DEAH-boxand DExH-box proteins
ESTHER http://www.ensam.inra.fr/cholinesterase/ Esterases and alpha/beta hydrolase enzymesand relatives
EndogenousGPCRList http://www.biomedcomp.com/GPCR.html G protein-coupled receptors; expression in cell lines
FUNPEP http://www.gpcr.org/FUNPEP/db Low-complexity or compositionally-biased protein sequences
GPCRDB http://swift.embl-heidelberg.de/7tm/ G protein-coupled receptors
GenProtEC http://genprotec.mbl.eduEscherichia coli K-12 genome, geneproducts and homologs
HIV Molecular Immunology Database http://hiv-web.lanl.gov/immunology/ HIV epitopes
HUGEhttp://www.kazusa.or.jp/huge/ Large (50 kDa) human proteinsand cDNA sequences
Histone Database http://genome.nhgri.nih.gov/histones/ Histone and histonefold sequences and structures
Homeobox Page http://copan.bioz.unibas.ch/homeo.html Information relevant to homeobox proteins, classification and evolution
Homeodomain Resource http://genome.nhgri.nih.gov/homeodomain Homeodomain sequences, structures, and relatedgenetic and genomic information
IMGT http://imgt.cines.fr:8104/ Immunoglobulin, T cell receptorand MHC sequencesfrom human andother vertebrates
IMGT/HLA http://www.ebi.ac.uk/imgt/hla/ Human major histocompatibility complexes
InBase http://www.neb.com/neb/inteins.html Intervening protein sequences (inteins) andmotifs
Kabat Database http://immuno.bme.nwu.edu/ Sequences of proteins of immunological interest
LGICdb http://www.pasteur.fr/recherche/banques/LGIC/LGIC.html Ligand-gated ion channel subunit sequences
MEROPS http://www.merops.co.uk Proteolytic enzymes (proteases/peptidases)
MHCPEP http://wehih.wehi.edu.au/mhcpep/ MHC-binding peptides
MembraneProteinDatabase http://biophys.bio.tuat.ac.jp/ohshima/database/ Membrane protein sequences, transmembrane regions and structures
MetaFam http://metafam.ahc.umn.edu/ Integrated protein family information
Nuclear Receptor Resource http://nrr.georgetown.edu/nrr/nrr.html Nuclear receptor superfamily
Olfactory Receptor Database http://ycmi.med.yale.edu/senselab/ordb/ Sequences for olfactory receptor-like molecules
PKR http://pkr.sdsc.edu Protein kinase sequences, enzymology, genetics and molecular and structural properties
PPMdb http://sphinx.rug.ac.be:8080/ppmdb/index.html Arabidopsis plasma membrane protein sequence and expression data
PROMISE http://bioinf.leeds.ac.uk/promise/ Prosthetic centers andmetal ions in proteinactive sites
Peptaibol http://www.cryst.bbk.ac.uk/peptaibol/welcome.html Peptaibol(antibiotic peptide) sequences
PhosphoBase http://www.cbs.dtu.dk/databases/PhosphoBase/ Protein phosphorylation sites
PlantsP http://PlantsP.sdsc.edu Plant protein kinases and protein phosphatases
Prolysis http://delphi.phys.univ-tours.fr/Prolysis/ Proteases and natural and synthetic protease inhibitors
Protein InformationResource (PIR) http://pir.georgetown.edu Comprehensive, annotated, non-redundant protein sequence database
Ribonuclease P Database http://www.mbio.ncsu.edu/RNaseP/home.html RNase P sequences, alignments and structures
SENTRA http://wit.mcs.anl.gov/WIT2/Sentra/HTML/sentra.html Sensory signal transduction proteins
SWISS-PROT/TrEMBL http://www.expasy.ch/sprot Curated protein sequences
TIGRFAMs http://www.tigr.org/TIGRFAMs Protein family resource for the functional identification of proteins
TRANSFAC http://transfac.gbf.de/TRANSFAC/index.html Transcription factors and binding sites
Wnt Database http://www.stanford.edu/~rnusse/wntwindow.html Wnt proteins and phenotypes
TFD http://www.ifti.org/ Transcription factors and gene expression
trEST, trGEN and Hits http://hits.isb-sib.ch Predicted protein sequences