Gene Identification and Structure

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AllGenes http://www.allgenes.org Human and mouse gene index integrating gene, transcript and protein annotation
AresLab Intron Site http://www.cse.ucsc.edu/research/compbio/yeast_introns.html Yeast spliceosomal introns
AsMamDBhttp://166.111.30.65/ASMAMDB.html Alternatively-spliced mammalian genes
COMPELhttp://compel.bionet.nsc.ru/ Composite regulatory elements
CUTGhttp://www.kazusa.or.jp/codon/ Codon usage tables
DBTBS http://elmo.ims.u-tokyo.ac.jp/dbtbs/Bacillus subtilis binding factors and promoters
EIDhttp://mcb.harvard.edu/gilbert/EID/ Protein-coding, intron-containing genes
EPDhttp://www.epd.isb-sib.ch/ Eukaryotic POL II promoters with experimentally-determined transcription start sites
ExInt http://intron.bic.nus.edu.sg/exint/exint.html Exon-intron structureof eukaryotic genes
HUNT http://www.hri.co.jp/HUNT Annotated human full-length cDNA sequences
IDB/IEDB http://nutmeg.bio.indiana.edu/intron/index.html Intron sequence and evolution
PLACEhttp://www.dna.affrc.go.jp/htdocs/PLACE Plant cis-acting regulatory elements
PlantCARE http://sphinx.rug.ac.be:8080/PlantCARE/index.htm Plant cis-acting regulatory elements
PromEC http://bioinfo.md.huji.ac.il/marg/promecEscherichia coli mRNApromoters with experimentally identified transcriptional start sites
RRNDBhttp://rrndb.cme.msu.edu Variation in prokaryotic ribosomal RNA operons
STRBase http://www.cstl.nist.gov/div831/strbase/ Short tandem DNArepeats
SpliceDB http://genomic.sanger.ac.uk/spldb/SpliceDB.html Canonical and non-canonical mammalian splicesites
TRRD http://wwwmgs.bionet.nsc.ru/mgs/dbases/trrd4 Transcription regulatory regions of eukaryotic genes
TransTerm http://uther.otago.ac.nz/Transterm.html Codon usage, start and stop signals
VIDA http://www.biochem.ucl.ac.uk/bsm/virus_database/VIDA.html Virus genome open reading frames
WormBase http://www.wormbase.org Guide to Caernorhabditis elegans biology
YIDB http://www.EMBL-Heidelberg.DE/ExternalInfo/seraphin/yidb.html Yeast nuclear and mitochondrial intron sequences
rSNP Guide http://wwwmgs.bionet.nsc.ru/mgs/systems/rsnp/ Single nucleotide polymorphisms in regulatory gene regions